List of publications AME

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Total found: 589 records
Kim H.W., Park B.H., Park H., Baek B.C., Choi I.G., Rhee M.S. (2022) Low-shear modeled microgravity affects metabolic networks of Escherichia coli O157:H7 EDL933: Further insights into space-microbiology consequences. Food Research International 154: 111013.
DOI: 10.1016/j.foodres.2022.111013
Kindler G.S., Wong H., Larkum A.W.D., Johnson M., MacLeod F.I., Burns B.P. (2022) Genome-resolved metagenomics provides insights into the functional complexity of microbial mats in Blue Holes, Shark Bay. FEMS Microbiology Ecology 98: fiab158.
DOI: 10.1093/femsec/fiab158
Marian I.M., Vonk P.J., Valdes I.D., Barry K., Bostock B., Carver A., Daum C., Lerner H., Lipzen A., Park H., Schuller M.B.P., Tegelaar M., Tritt A., Schmutz J., Grimwood J., Lugones L.G., Choi I.-G., Wösten H.A.B., Grigoriev I., Ohm R.A. (2022) The transcription factor Roc1 is a key regulator of cellulose degradation in the wood-decaying mushroom Schizophyllum commune. mBio 13: e0062822.
DOI: 10.1128/mbio.00628-22
Masuda T., Inomura K., Mareš J., Prášil O. (2022) Crocosphaera watsonii. Trends in Microbiology 30: 805-806.
DOI: 10.1016/j.tim.2022.02.006
Metz S., Huber P., Mateus-Barros E., Junger P.C., de Melo M., Bagatini I.L., Izaguirre I., dos Reis M.C., Llames M.E., Accattatis V., Quiroga M.V., Devercelli M., Schiaffino M.R., Niño-García J.P., Navarro M.B., Modenutti B., Vieira H., Saraceno M., Sabio y García C.A., Pereira E., González-Revello A., Piccini C., Unrein F., Alonso C., Sarmento H. (2022) A georeferenced rRNA amplicon database of aquatic microbiomes from South America. Scientific Data 9: 565.
DOI: 10.1038/s41597-022-01665-z
Nobs S.J., MacLeod F.I., Wong H., Burns B.P. (2022) Eukarya the chimera: eukaryotes, a secondary innovation of the two domains of life? Trends in Microbiology 30: 421-431.
DOI: 10.1016/j.tim.2021.11.003
Oren A., Mareš J., Rippka R. (2022) Validation of the names Cyanobacterium and Cyanobacterium stanieri, and proposal of Cyanobacteriota phyl. nov. International Journal of Systematic and Evolutionary Microbiology 72: 005528.
DOI: 10.1099/ijsem.0.005528
Petruželová J., Bojková J., Sychra J., Šorfová V., Polášková V., Vrba J. (2022) Complex effects of acidification, habitat properties and fish stock on littoral macroinvertebrate assemblages in montane standing waters. Journal of Limnology 81: 2053.
DOI: 10.4081/jlimnol.2022.2053
Pires de Paula C. (2022) Diversity of cave microbiomes. In: Cave fauna of Brazil 104 - 129.
DOI: ISBN: 978-65-87674-05-6
Pires de Paula C., Macek P., Bárta J., Borovec J., Svobodová I., Holá E., Lepš J., Sirová D. (2022) Parasitic trophic mode of plant host affects the extent of colonization, but does not induce systematic shifts in the composition of foliar endophytic assemblages in temperate meadow ecosystems. Functional Ecology 36: 1177–1190.
DOI: 10.1111/1365-2435.13992
Prokopchuk G., Korytář T., Juricová V., Horák A., Majstorović J., Šimek K., Lukeš J. (2022) Trophic flexibility of marine diplonemids - switching from osmotrophy to bacterivory The ISME Journal 16: 1409–1419.
DOI: 10.1038/s41396-022-01192-0

Documents to download:
Prokopchuk_2022_ISMEJ (pdf)
Ray A.E., Zaugg J., Benaud N., Chelliah D.S., Bay S., Wong H., Leung P.M., Ji M., Terauds A., Montgomery K., Greening C., Cowan D.A., Kong W., Williams T.J., Hugenholtz P., Ferrari B.C. (2022) Atmospheric chemosynthesis is phylogenetically and geographically widespread and contributes significantly to carbon fixation throughout cold deserts. ISME Journal 16: 2547–2560.
DOI: 10.1038/s41396-022-01298-5
Řeháková K., Čapková K., Altman J., Dančák M., Majeský L., Doležal J. (2022) Contrasting patterns of soil chemistry and vegetation cover determine diversity changes of soil phototrophs along an Afrotropical elevation gradient. Ecosystems 25: 1-17.
DOI: 10.1007/s10021-021-00698-6
Říha M., Rabaneda Bueno R., Jarić I., Souza A., Vejřík L., Draštík V., Blabolil P., Holubová M., Jůza T., Gjelland K.Ø., Rychtecký P., Sajdlová Z., Kočvara L., Tušer M., Prchalová M., Seďa J., Peterka J. (2022) Seasonal habitat use of three predatory fishes in a freshwater ecosystem. Hydrobiologia 849: 3351-3371.
DOI: 10.1007/s10750-022-04938-1
Rixen C., Høye T.T., Macek P., Aerts R., Alatalo J.M., Anderson J.T. ..... (2022) Winters are changing: snow effects on Arctic and alpine tundra ecosystems. Arctic Science 8: 572–608.
DOI: 10.1139/as-2020-0058
Rychtecký P., Znachor P. (2022) Prostorová heterogenita nádrží a její důsledky pro kvalitu vody. [The spatial heterogeneity of reservoirs and its implications for water quality.] Živa 5: 231-234.
Schagerl M., Siedler R., Konopáčová E., Ali S.S. (2022) Estimating biomass and vitality of microalgae for monitoring cultures: A roadmap for reliable measurements. Cell 11: 2455.
DOI: 10.3390/cells11152455
Šimek K., Mukherjee I., Nedoma J., Pires de Paula C., Jezberová J., Sirová D., Vrba J. (2022) CARD-FISH and prey tracer techniques reveal the role of overlooked flagellate groups as major bacterivores in freshwater hypertrophic shallow lakes. Environmental Microbiology 24: 4256–4273.
DOI: 10.1111/1462-2920.15846
Vadaq N., Schirmer M., Tunjungputri R.N., Vlamakis H., Chiriac M., Ardiansyah E., Gasem M.H., Joosten L.A.B., de Groot P.G., Xavier R.J., Netea M.G., van der Ven A., de Mast Q. (2022) Untargeted plasma metabolomics and gut microbiome profiling provide novel insights into the regulation of platelet reactivity in healthy individuals. Thrombosis and Haemostasis 122: 529-539.
DOI: 10.1055/a-1541-3706
Valencia E., Galland T., Carmona C., Goberna M., Götzenberger L., Lepš J., Verdú M., Macek P., de Bello F. (2022) The functional structure of plant communities drives soil functioning via changes in soil abiotic properties. Ecology 103: article number: e3833.
DOI: 10.1002/ecy.3833
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