| Celkem nalezeno: 21 záznamů |
Asghar U.,
Mukherjee I., Sonntag B.,
Pires de Paula C.,
Kasalický V.,
Bulzu P.,
Singh A.,
Shabarova T., Piwosz K.,
Šimek K. (2025) Morphological and molecular analyses of season-specific responses of freshwater ciliate communities to top-down and bottom-up experimental manipulations. mSystems
10: e00304-25.
DOI: 10.1128/msystems.00304-25
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Fernandes C.,
Haber M.,
Layoun P.,
Chiriac M.,
Bulzu P.,
Ghai R.,
Kasalický V.,
Shabarova T., Grossart H., Woodhouse J., Piwosz K., Alonso C., Zanetti J., Hamilton D.P., Ngochera M., Nakano S., Okazaki Y.,
Salcher M. (2025) Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium. Nature Microbiology
10: 2194–2206.
DOI: 10.1038/s41564-025-02091-8
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Khan S., Wdówka K., Calkiewicz J., Rychert K., Nawrocka L., Ameryk A.,
Shabarova T.,
Mukherjee I.,
Šimek K., Jakubowska A., Zalewski M., Piwosz K. (2025) High-temporal resolution of microbial food web dynamics and structure during phytoplankton blooms in the Baltic Sea Environmental Microbiology
27: e70190.
DOI: 10.1111/1462-2920.70190
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Salcher M.,
Layoun P.,
Fernandes C.,
Chiriac M.,
Bulzu P.,
Ghai R.,
Shabarova T., Lanta V., Callieri C., Sonntag B., Posch T., Lepori F. ,
Znachor P.,
Haber M. (2025) Bringing the uncultivated microbial majority of freshwater ecosystems into culture. Nature Communications
16: 7971.
DOI: 10.1038/s41467-025-63266-9
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Šimek K.,
Asghar U., Sonntag B.,
Kasalický V.,
Shabarova T.,
Mukherjee I. (2025) New lineage of scuticociliates dominates the ciliate community and bacterivory in hypolimnetic waters of a freshwater reservoir.. The ISME Journal
19: wraf148.
DOI: 10.1093/ismejo/wraf148
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Boukheloua R.,
Mukherjee I.,
Park H.,
Šimek K.,
Kasalický V., Ngochera M., Grossart H., Picazo-Mozo A., Camacho A. , Cabello-Yeves P.J., Rodriguez-Valera F. , Callieri C., Andrei A.S., Pernthaler J., Posch T., Alfreider A., Sommaruga R., Hahn M., Sonntag B., López-García P., Moreira D., Jardillier L., Lepère C., Biderre-Petit C., Bednarska A., Ślusarczyk M., Tóth V.R., Banciu H.L., Kormas K., Orlić S., Śantić D., Muyzer G., Herlemann D.P.R., Tammert H., Bertilsson S., Langenheder S., Zechmeister T. , Salmaso N., Storelli N., Capelli C., Lepori F. , Lanta V.,
Henriques Vieira H.,
Kostanjšek F.,
Kabeláčová K.,
Chiriac M.,
Haber M.,
Shabarova T.,
Rychtecký P.,
Fernandes C.,
Znachor P.,
Szöke-Nagy T.,
Layoun P.,
Wong H., Kavagutti V.,
Bulzu P.,
Salcher M., Piwosz K.,
Ghai R. (2024) Global freshwater distribution of Telonemia protists. The ISME Journal
18: wrae177.
DOI: 10.1093/ismejo/wrae177
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Mukherjee I., Grujčić V.,
Salcher M.,
Znachor P.,
Seďa J., Devetter M.,
Rychtecký P.,
Šimek K.,
Shabarova T. (2024) Integrating depth-dependent protist dynamics and microbial interactions in spring succession of a freshwater reservoir. Environmental Microbiome
19: 31.
DOI: 10.1186/s40793-024-00574-5
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Park H.,
Bulzu P.,
Shabarova T., Kavagutti V.,
Ghai R.,
Kasalický V., Jezberová J. (2024) Uncovering the genomic basis of symbiotic interactions and niche adaptations in freshwater picocyanobacteria. Microbiome
12: 150.
DOI: 10.1186/s40168-024-01867-0
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Schillé L., Valdés-Correcher E., Archaux F., Balacenoiu F., Bjørn M. C., Bogdziewicz M., Boivin T., Branco M., et al., Mallick S., Mäntylä E., Mårell A., Milanović S., Molnár M., Moreira X., Moser V., Mrázová A., et al., Sam K., Sedikhin N.V.,
Shabarova T., Tack A.J.M., Thomas R., et al., Varela Z., Barbaro L., Castagneyrol B. (2024) Decomposing drivers in avian insectivory: Large-scale effects of climate, habitat and bird diversity. Journal of Biogeography
51: 1079-1094.
DOI: 10.1111/jbi.14808
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Schmidt S., Svátková M., Kodeš V.,
Shabarova T. (2024) Correlations between the increase in atmospheric CO2 and temperature, and the subsequent increase in silica, and groundwater organisms. Science of the Total Environment
955: 176970.
DOI: 10.1016/j.scitotenv.2024.176970
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Kavagutti V.,
Bulzu P.,
Chiriac M.,
Salcher M.,
Mukherjee I.,
Shabarova T.,
Grujčić V.,
Mehrshad M.,
Kasalický V., Andrei A.S., Jezberová J.,
Seďa J.,
Rychtecký P.,
Znachor P.,
Šimek K.,
Ghai R. (2023) High‑resolution metagenomic reconstruction of the freshwater spring bloom. Microbiome
11: 15.
DOI: 10.1186/s40168-022-01451-4
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Park H.,
Shabarova T.,
Salcher M.,
Kosová L.,
Rychtecký P.,
Mukherjee I.,
Šimek K.,
Porcal P.,
Seďa J.,
Znachor P.,
Kasalický V. (2023) In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model. Microbiome
11: 112.
DOI: 10.1186/s40168-023-01522-0
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Mujakic I., Andrei A.,
Shabarova T., Kolesár Fecskeová L.,
Salcher M., Piwosz K.,
Ghai R., Koblížek M. (2021) Common presence of phototrophic Gemmatimonadota in temperate freshwater lakes. mSystems
6: e01241-20.
DOI: 10.1128/mSystems.01241-20
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Shabarova T.,
Salcher M.,
Porcal P.,
Znachor P.,
Nedoma J., Grossart H.,
Seďa J.,
Hejzlar J.,
Šimek K. (2021) Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession. Nature Microbiology
6: 479–488.
DOI: 10.1038/s41564-020-00852-1
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Mukherjee I.,
Salcher M., Andrei A., Kavagutti V.,
Shabarova T., Grujčić V.,
Haber M.,
Layoun P., Hodoki Y., Nakano S.,
Šimek K.,
Ghai R. (2020) A freshwater radiation of diplonemids Environmental Microbiology
22: 4658–4668.
DOI: doi.org/10.1101/2020.05.14.095992
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Piwosz K.,
Shabarova T., Pernthaler J., Posch T.,
Šimek K.,
Porcal P.,
Salcher M. (2020) Bacterial and eukaryotic small-subunit amplicon data do not provide a quantitative picture of microbial communities, but they are reliable in the context of ecological interpretations mSphere
5: e00052-20.
DOI: 10.1128/mSphere.00052-20
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Grujčić V., Nuy J. K.,
Salcher M.,
Shabarova T.,
Kasalický V., Boenigk J., Jensen M. ,
Šimek K. (2018) Cryptophyta as major bacterivores in freshwater summer plankton ISME Journal
12: 1668-1681.
DOI: 10.1038/s41396-018-0057-5
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Piwosz K.,
Shabarova T., Tomasch J.,
Šimek K., Kopejtka K., Kahl S., Pieper D.H. , Koblížek M. (2018) Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS) ISME Journal
12: 2640-2654.
DOI: 10.1038/s41396-018-0213-y
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Šimek K.,
Grujčić V., Hahn M., Horňák K., Jezberová J.,
Kasalický V.,
Nedoma J.,
Salcher M.,
Shabarova T. (2018) Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates Limnology and Oceanography
63: 484–502.
DOI: 10.1002/lno.10759
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Shabarova T.,
Kasalický V.,
Šimek K.,
Nedoma J.,
Znachor P., Posch T., Pernthaler J.,
Salcher M. (2017) Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach Environmental Microbiology
19: 1296–1309 .
DOI: 10.1111/1462-2920.13663
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