Publikace
| Celkem nalezeno: 31 záznamů |
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Chiriac M.,
Bulzu P., Andrei A.S., Okazaki Y., Nakano S.,
Haber M.,
Kavagutti V.,
Layoun P.,
Ghai R.,
Salcher M. (2022) Ecogenomics sheds light on diverse lifestyle strategies in freshwater CPR. Microbiome
10: 84.
DOI: 10.1186/s40168-022-01274-3 |
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Bulzu P.,
Kavagutti V.,
Chiriac M., Vavourakis C.D. , Inoue K. , Kandori H. , Andrei A.S.,
Ghai R. (2021) Heliorhodopsin evolution is driven by photosensory promiscuity in monoderms. mSphere
6: e00661-21.
DOI: 10.1128/mSphere.00661-21 |
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Durán-Viseras A.,
Andrei A., Vera-Gargallo B.,
Ghai R., Sánchez-Porro C., Ventosa A. (2021) Culturomics-based genomics sheds light on the ecology of the new haloarchaeal genus Halosegnis. Environmental Microbiology
23: 3418–3434.
DOI: 10.1111/1462-2920.15082 |
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Mujakic I.,
Andrei A.,
Shabarova T., Kolesár Fecskeová L.,
Salcher M., Piwosz K.,
Ghai R., Koblížek M. (2021) Common presence of phototrophic Gemmatimonadota in temperate freshwater lakes. mSystems
6: e01241-20.
DOI: 10.1128/mSystems.01241-20 |
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Saha S.,
Bulzu P., Urajová P.,
Mareš J., Konert G., Manoel J.C., Macho M. , Ewe D., Hrouzek P., Masojídek J.,
Ghai R., Sourav K. (2021) Quorum-sensing signals from epibiont mediate the induction of novel microviridins in the mat-forming cyanobacterial genus Nostoc. mSphere
6: e00562-21.
DOI: 10.1128/mSphere.00562-21 |
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Cabello-Yeves P.J., Zemskaya T.I., Zakharenko A.S., Sakirko M.V., Ivanov V.G.,
Ghai R., Rodriguez-Valera F. (2020) Microbiome of the deep Lake Baikal, a unique oxic bathypelagic habitat Limnology and Oceanography
65: 1471–1488.
DOI: doi.org/10.1002/lno.11401 |
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Inoue K. , Tsunoda S.P., Singh M., Tomida S., Hososhima S., Konno M., Nakamura R., Watanabe H. , Bulzu P.A., Banciu H.L.,
Andrei A., Uchihashi T.,
Ghai R., Béjà O., Kandori H. (2020) Schizorhodopsins: A family of rhodopsins from Asgard archaea that function as light-driven inward H+ pumps Science Advances
6: eaaz2441.
DOI: 10.1126/sciadv.aaz2441 |
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Mukherjee I.,
Salcher M.,
Andrei A.,
Kavagutti V.,
Shabarova T., Grujčić V.,
Haber M.,
Layoun P., Hodoki Y., Nakano S.,
Šimek K.,
Ghai R. (2020) A freshwater radiation of diplonemids Environmental Microbiology
22: 4658–4668.
DOI: doi.org/10.1101/2020.05.14.095992 |
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Park S.J.,
Andrei A.,
Bulzu P.,
Kavagutti V.,
Ghai R., Mosier A.C. (2020) Expanded diversity and metabolic versatility of marine nitrite-oxidizing bacteria revealed by cultivation-and genomics-based approaches. Applied and Environmental Microbiology
86: e01667-20.
DOI: doi.org/10.1128/AEM.01667-20 |
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Salcher M.,
Andrei A.,
Bulzu P., Keresztes Z.G., Banciu H.L.,
Ghai R. (2020) Visualization of Lokiarchaeia and Heimdallarchaeia (Asgardarchaeota) by fluorescence in situ hybridization and catalyzed reporter deposition (CARD-FISH) mSphere
5: e00686-20.
DOI: doi.org/10.1128/mSphere.00686-20 |
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Andrei A.,
Salcher M.,
Mehrshad M.,
Rychtecký P.,
Znachor P.,
Ghai R. (2019) Niche-directed evolution modulates genome architecture in freshwater Planctomycetes ISME Journal
13: 1056–1071.
DOI: 10.1038/s41396-018-0332-5 |
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Bulzu P.A.,
Andrei A.,
Salcher M.,
Mehrshad M., Inoue K. , Kandori H. , Béjà O.,
Ghai R., Banciu H.L. (2019) Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche Nature Microbiology
4: 1129–1137 .
DOI: 10.1038/s41564-019-0404-y |
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Durán-Viseras A.,
Andrei A.,
Ghai R., Sánchez-Porro C., Ventosa A. (2019) New Halonotius Species Provide Genomics-Based Insights Into Cobalamin Synthesis in Haloarchaea Frontiers in Microbiology
10: 1928.
DOI: 10.3389/fmicb.2019.01928 |
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Flores-Uribe J., Hevroni G. ,
Ghai R., Pushkarev A. , Inoue K. , Kandori H. , Béjà O. (2019) Heliorhodopsins are absent in diderm (Gram-negative) bacteria: Some thoughts and possible implications for activity Environmental Microbiology Reports
11: 419-424.
DOI: 10.1111/1758-2229.12730 |
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Kavagutti V.,
Andrei A.,
Mehrshad M.,
Salcher M.,
Ghai R. (2019) Phage-centric ecological interactions in aquatic ecosystems revealed through ultradeep metagenomics Microbiome
7: 135.
DOI: 10.1186/s40168-019-0752-0 |
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Salcher M., Schaefle D., Kaspar M., Neuenschwander S.,
Ghai R. (2019) Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae ISME Journal
13: 2764–2777.
DOI: 10.1038/s41396-019-0471-3 |
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Vavourakis C.D. ,
Mehrshad M., Balkema C., van Hall R.,
Andrei A.,
Ghai R., Sorokin D., Muyzer G. (2019) Metagenomes and metatranscriptomes shed new light on the microbial-mediated sulfur cycle in a Siberian soda lake BMC Biology
17: 69.
DOI: 10.1186/s12915-019-0688-7 |
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Mehrshad M., Rodriguez-Valera F. , Amoozegar M. A., López-García P.,
Ghai R. (2018) The enigmatic SAR202 cluster up close: Shedding light on a globally distributed dark ocean lineage involved in sulfur cycling The ISME Journal
12: 655-668 .
DOI: 10.1038/s41396-017-0009-5 |
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Mehrshad M., Salcher M.M., Okazaki Y., Nakano S.,
Šimek K.,
Andrei A.,
Ghai R. (2018) Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi Microbiome
6: 176.
DOI: 10.1186/s40168-018-0563-8 |
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Neuenschwander S.,
Ghai R., Pernthaler J.,
Salcher M. (2018) Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria ISME Journal
12: 185-198 .
DOI: 10.1038/ismej.2017.156 |
