Publications
| Total found: 143 records |
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Mehrshad M., Salcher M.M., Okazaki Y., Nakano S.,
Šimek K., Andrei A.,
Ghai R. (2018) Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi Microbiome
6: 176.
DOI: 10.1186/s40168-018-0563-8 |
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Piwosz K.,
Shabarova T., Tomasch J.,
Šimek K., Kopejtka K., Kahl S., Pieper D.H. , Koblížek M. (2018) Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS) ISME Journal
12: 2640-2654.
DOI: 10.1038/s41396-018-0213-y |
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Šimek K.,
Grujčić V., Hahn M., Horňák K.,
Jezberová J.,
Kasalický V.,
Nedoma J.,
Salcher M.,
Shabarova T. (2018) Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates Limnology and Oceanography
63: 484–502.
DOI: 10.1002/lno.10759 |
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Sirová D., Bárta J.,
Šimek K., Posch T., Pech J., Stone J., Borovec J., Adamec L.,
Vrba J. (2018) Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant Microbiome
6 : 225.
DOI: 10.1186/s40168-018-0600-7 |
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Vrba J., Benedová Z.,
Jezberová J.,
Matoušů A., Musil M.,
Nedoma J., Pechar L., Potužák J.,
Řeháková K.,
Šimek K., Šorf M., Zemanová J. (2018) Nevstoupíš dvakrát do téhož rybníka – předběžná zpráva o stavu dnešních hypertrofních rybničních ekosystémů [You cannot step into the same fishpond twice – A preliminary report on the current status of hypertrophic fishpond ecosystems] Vodní hospodářství
68 (8): 1-5.
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Vrba J., Benedová Z.,
Jezberová J.,
Matoušů A., Musil M.,
Nedoma J., Pechar L., Potužák J.,
Řeháková K.,
Šimek K., Šorf M., Zemanová J. (2018) Nevstoupíš dvakrát do téhož rybníka aneb vývoj rybničních ekosystémů od Šusty k hypertrofii [You cannot step into the same fishpond twice - an evolution of fishpond ecosystems to hypertrophy] Sborník konference Rybníky 2018
2-11.
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Gabaldon Tebar C., Devetter M.,
Hejzlar J.,
Šimek K.,
Znachor P.,
Nedoma J.,
Seďa J. (2017) Repeated flood disturbance enhances rotifer dominance and diversity in a zooplankton community of a small dammed mountain pond Journal of Limnology
76 : 292–304 .
DOI: 10.4081/jlimnol.2016.1544 |
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Horňák K.,
Kasalický V.,
Šimek K., Grossart H. (2017) Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans-C and Polynucleobacter-B clusters of Betaproteobacteria Environmental Microbiology
19: 4519-4535.
DOI: 10.1111/1462-2920.13900 |
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Horňák K.,
Kasalický V.,
Šimek K., Grossart H. (2017) Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans-C and Polynucleobacter-B clusters of Betaproteobacteria Environmental Microbiology
19: 4519–4535 .
DOI: 10.1111/1462-2920.13900 |
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Jezberová J.,
Jezbera J.,
Znachor P.,
Nedoma J.,
Kasalický V.,
Šimek K. (2017) The Limnohabitans genus harbors generalistic and opportunistic subtypes: evidence from spatiotemporal succession in a canyon-shaped reservoir Applied and Environmental Microbiology
83: e01530-17.
DOI: 10.1128/AEM.01530-17 |
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Jezberová J.,
Jezbera J.,
Znachor P.,
Nedoma J.,
Kasalický V.,
Šimek K. (2017) The Limnohabitans genus harbors generalistic and opportunistic subtypes: evidence from spatiotemporal succession in a canyon-shaped reservoir Applied and Environmental Microbiology
83: e01530-17.
DOI: 10.1128/AEM.01530-17 |
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Matoušů A., Osudar R.,
Šimek K., Bussmann I. (2017) Methane distribution and methane oxidation in the water column of the Elbe estuary, Germany Aquatic Sciences
79 : 443–458. .
DOI: 10.1007/s00027-016-0509-9 |
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Pitsch G., Adamec L., Dirren S., Nitsche F. ,
Šimek K.,
Sirová D., Posch T. (2017) The Green Tetrahymena utriculariae n. sp. (Ciliophora, Oligohymenophorea) with its endosymbiotic algae (Micractinium sp.), living in traps of a carnivorous aquatic plant Journal of Eukaryotic Microbiology
64: 322–335 .
DOI: 10.1111/jeu.12369 |
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Shabarova T.,
Kasalický V.,
Šimek K.,
Nedoma J.,
Znachor P., Posch T., Pernthaler J.,
Salcher M. (2017) Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach Environmental Microbiology
19: 1296–1309 .
DOI: 10.1111/1462-2920.13663 |
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Šimek K., Pitsch G.,
Salcher M.,
Sirová D.,
Shabarova T., Adamec L., Posch T. (2017) Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa Journal of Eukaryotic Microbiology
64: 336–348. .
DOI: 10.1111/jeu.12368 |
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Baltar F., Palovaara J., Unrein U., Catala P., Horňák K.,
Šimek K., Vaqué D., Massama R., Gasol J., Pinhassi J. (2016) Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions. ISME Journal
10: 568-581.
DOI: doi:10.1038/ismej.2015.135 |
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Salcher M., Ewert C.,
Šimek K.,
Kasalický V., Posch T. (2016) Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains. FEMS Microbiology Ecology
92: -.
DOI: 10.1093/femsec/fiv156 |
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Salcher M.,
Šimek K. (2016) Isolation and cultivation of planktonic freshwater microbes is essential for a comprehensive understanding of their ecology. Aquatic Microbial Ecology
77: 183–196..
DOI: 10.3354/ame01796 |
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Šimek K. (2016) Metody studia vodních bakterií pomocí fluorescenční mikroskopie [Methods of fluorescence microscopy to study aquatic bacteria]. Živa
64 (2): 76.
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Šimek K.,
Kubečka J. (2016) Rozhovor s hydrobiologem Karlem Šimkem, držitelem medaile G.J. Mendela [An interview with a hydrobiologist, Karel Šimek, who received a medal of the Czech Academy of Sciences "The Gregor Johann Mendel Honorary Medal for Merits in Biological Sciences"]. Živa
64 (2): 27-29.
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