Publications

Total found: 130 records
Shabarova T., Kasalický V., Šimek K., Nedoma J., Znachor P., Posch T., Pernthaler J., Salcher M. (2017) Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach Environmental Microbiology 19: 1296–1309 .
DOI: 10.1111/1462-2920.13663
Šimek K., Pitsch G., Salcher M., Sirová D., Shabarova T., Adamec L., Posch T. (2017) Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa Journal of Eukaryotic Microbiology 64: 336–348. .
DOI: 10.1111/jeu.12368
Baltar F., Palovaara J., Unrein U., Catala P., Horňák K., Šimek K., Vaqué D., Massama R., Gasol J., Pinhassi J. (2016) Marine bacterial community structure resilience to changes in protist predation under phytoplankton bloom conditions. ISME Journal 10: 568-581.
DOI: doi:10.1038/ismej.2015.135
Salcher M., Ewert C., Šimek K., Kasalický V., Posch T. (2016) Interspecific competition and protistan grazing affect the coexistence of freshwater betaproteobacterial strains. FEMS Microbiology Ecology 92: -.
DOI: 10.1093/femsec/fiv156
Salcher M., Šimek K. (2016) Isolation and cultivation of planktonic freshwater microbes is essential for a comprehensive understanding of their ecology. Aquatic Microbial Ecology 77: 183–196..
DOI: 10.3354/ame01796
Šimek K. (2016) Metody studia vodních bakterií pomocí fluorescenční mikroskopie [Methods of fluorescence microscopy to study aquatic bacteria]. Živa 64 (2): 76.
Šimek K., Kubečka J. (2016) Rozhovor s hydrobiologem Karlem Šimkem, držitelem medaile G.J. Mendela [An interview with a hydrobiologist, Karel Šimek, who received a medal of the Czech Academy of Sciences "The Gregor Johann Mendel Honorary Medal for Merits in Biological Sciences"]. Živa 64 (2): 27-29.
Znachor P., Hejzlar J., Vrba J., Nedoma J., Seďa J., Šimek K., Komárková J., Kopáček J., Šorf M., Kubečka J., Matěna J., Říha M., Peterka J., Čech M., Vašek M. (2016) Brief history of long-term ecological research into aquatic ecosystems and their catchments in the Czech Republic. Part I: Manmade reservoirs. Biology Centre CAS, v. v. i., Institute of Hydrobiology, České Budějovice, ISBN 978–80–86668–38–3: 80 p.
Adamec L., Sirová D., Vrba J., Bárta J., Šantrůček J., Šimek K. (2015) Lovci, nebo zahradníci? Komplexní výzkum vodních masožravých bublinatek [Hunters or gardeners? A complex research of aquatic carnivorous bladderworts]. Živa 63: 286-288.
Grujčić V., Kasalický V., Šimek K. (2015) Prey-specific growth responses of freshwater flagellate communities induced by morphologicallly distinct bacteria from the genus Limnohabitans. Applied and Environmental Microbiology 81: 4993–5002 .
DOI: 10.1128/AEM.00396-15
Weinbauer M.G. , Dolan J., Šimek K. (2015) A population of giant tailed virus-like particles associated with heterotrophic flagellates in a lake-type reservoir. Aquatic Microbial Ecology 76 : 111–116.
DOI: 10.3354/ame01769
Šimek K., Nedoma J., Znachor P., Kasalický V., Jezbera J., Horňák K., Seďa J. (2014) A finely tuned symphony of factors modulates the microbial food web of a freshwater reservoir in spring. Limnology and Oceanography 59: 1477–1492..
Eiler A., Drakare S., Bertilsson S., Pernthaler J., Peura S., Rofner C., Šimek K., Yang Y., Znachor P., Lindström E. (2013) Unveiling distribution patterns of freshwater phytoplankton by a next generation sequencing based approach. PLOS ONE 8: e53516..
Jezbera J., Jezberová J., Kasalický V., Šimek K., Hahn M. (2013) Patterns of Limnohabitans microdiversity across a large set of freshwater habitats as revealed by reverse line blot hybridization. PLOS ONE 8: e58527..
DOI: DOI: 10.1371/journal.pone.0058527
Kasalický V., Jezbera J., Hahn M., Šimek K. (2013) The diversity of the Limnohabitans genus, an important group of freshwater bacterioplankton, by characterization of 35 isolated strains. PLOS ONE 8: e58209..
Rulík M., Baudišová D., Růžička J., Šimek K. (2013) Mikrobiální ekologie vod [Aquatic mnicrobial ecology (textbook)]. In: Univerzita Palackého v Olomouci (Skripta) ISBN 978–80–244–3477–3 292 p.
Šimek K., Kasalický V., Jezbera J., Horňák K., Nedoma J., Hahn M., Bass D., Jost S., Boenigk J. (2013) Differential freshwater flagellate community response to bacterial food quality with a focus on Limnohabitans bacteria. ISME Journal 7: 1519–1530..
Hahn M., Scheuerl T., Jezberová J., Koll U., Jezbera J., Šimek K., Vannini C., Petroni G., Wu Q. (2012) The passive yet successful way of planktonic life: genomic and experimental analysis of the ecology of a free-living Polynucleobaster population. PLOS ONE 7: e32772..
DOI: DOI: 10.1371/journal.pone.0032772
Jezbera J., Jezberová J., Koll U., Horňák K., Šimek K., Hahn M. (2012) Contrasting trends in distribution of four major planktonic betaproteobacterial groups along a pH gradient of epilimnia of 72 freshwater habitats. FEMS Microbiology Ecology 81: 467–479..
DOI: DOI: 10.1111/j.1574-6941.2012.01372.x
Kasalický V., Jezbera J., Hahn M., Jezberová J., Hejzlar J., Šimek K. (2012) Ecology of planktonic freshwater bacteria of the Limnohabitans genus (Betaproteobacteria). In: Zborník príspevkov XVI. Konferencia SLS a ČLS Od molekúl po ekosystémy, Jasná, June 25–29, 2012, ISBN 978–80–971056–0–0: pp. 59–62.

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Biology Centre CAS
Institute of Hydrobiology
Na Sádkách 702/7
370 05 České Budějovice

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