Publications

Total found: 28 records
Okazaki Y., Fujinaga S., Salcher M., Callieri C., Tanaka A., Kohzu A., Oyagi H., Tamaki H., Nakano S. (2021) Microdiversity and phylogeographic diversification of bacterioplankton in pelagic freshwater systems revealed through long-read amplicon sequencing Microbiome 9: DOI: 10.1186/s40168-020-00974-y
Shabarova T., Salcher M., Porcal P., Znachor P., Nedoma J., Grossart H., Seďa J., Hejzlar J., Šimek K. (2021) Recovery of freshwater microbial communities after extreme rain events is mediated by cyclic succession Nature Microbiology DOI: 10.1038/s41564-020-00852-1
Di Cesare A., Dzhembekova N., Cabello-Yeves P.J., Eckert E.M., Slabakova V., Slabakova N., Peneva E., Bertoni R., Corno G., Salcher M., Kamburska L., Bertoni F., Rodriguez-Valera F. , Moncheva S., Callieri C. (2020) Genomic comparison and spatial distribution of different Synechococcus phylotypes in the Black Sea Frontiers in Microbiology 11: 1979.
DOI: doi.org/10.3389/fmicb.2020.01979
Mukherjee I., Salcher M., Andrei A., Kavagutti V., Shabarova T., Grujčić V., Haber M., Layoun P., Hodoki Y., Nakano S., Šimek K., Ghai R. (2020) A freshwater radiation of diplonemids Environmental Microbiology 22: 4658–4668.
DOI: doi.org/10.1101/2020.05.14.095992
Piwosz K., Shabarova T., Pernthaler J., Posch T., Šimek K., Porcal P., Salcher M. (2020) Bacterial and eukaryotic small-subunit amplicon data do not provide a quantitative picture of microbial communities, but they are reliable in the context of ecological interpretations mSphere 5: e00052-20.
DOI: 10.1128/mSphere.00052-20
Salcher M., Andrei A., Bulzu P., Keresztes Z.G., Banciu H.L., Ghai R. (2020) Visualization of Lokiarchaeia and Heimdallarchaeia (Asgardarchaeota) by fluorescence in situ hybridization and catalyzed reporter deposition (CARD-FISH) mSphere 5: e00686-20.
DOI: doi.org/10.1128/mSphere.00686-20
Šimek K., Grujčić V., Mukherjee I., Kasalický V., Nedoma J., Posch T., Mehrshad M., Salcher M. (2020) Cascading effects in freshwater microbial food webs by predatory Cercozoa, Katablepharidacea and ciliates feeding on aplastidic bacterivorous cryptophytes FEMS Microbiology Ecology 96: fiaa121.
DOI: doi.org/10.1093/femsec/fiaa121
Andrei A., Salcher M., Mehrshad M., Rychtecký P., Znachor P., Ghai R. (2019) Niche-directed evolution modulates genome architecture in freshwater Planctomycetes ISME Journal 13: 1056–1071.
DOI: 10.1038/s41396-018-0332-5
Bulzu P.A., Andrei A., Salcher M., Mehrshad M., Inoue K. , Kandori H. , Béjà O., Ghai R., Banciu H.L. (2019) Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche Nature Microbiology 4: 1129–1137 .
DOI: 10.1038/s41564-019-0404-y
Callieri C., Slabakova V., Dzhembekova N., Slabakova N., Peneva E., Cabello-Yeves P.J., Di Cesare A., Eckert E.M., Bertoni R., Corno G., Salcher M., Kamburska L., Bertoni F., Moncheva S. (2019) The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global “deep red fluorescence” ISME Journal 13: 1676-1687.
DOI: 10.1038/s41396-019-0378-z
Kavagutti V., Andrei A., Mehrshad M., Salcher M., Ghai R. (2019) Phage-centric ecological interactions in aquatic ecosystems revealed through ultradeep metagenomics Microbiome 7: 135.
DOI: 10.1186/s40168-019-0752-0
Salcher M., Schaefle D., Kaspar M., Neuenschwander S., Ghai R. (2019) Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae ISME Journal 13: 2764–2777.
DOI: 10.1038/s41396-019-0471-3
Alfreider A., Grimus V., Luger M., Ekblad A., Salcher M., Summerer M. (2018) Autotrophic carbon fixation strategies used by nitrifying prokaryotes in freshwater lakes FEMS Microbiology Ecology 94: 163.
DOI: 10.1093/femsec/fiy163
Bock K., Salcher M., Jensen M. , Pandey R.V., Boenigk J. (2018) Synchrony of eukaryotic and prokaryotic planktonic communities in three seasonally sampled Austrian lakes Frontiers in Microbiology 9: 1290.
DOI: 10.3389/fmicb.2018.01290
Grujčić V., Nuy J. K., Salcher M., Shabarova T., Kasalický V., Boenigk J., Jensen M. , Šimek K. (2018) Cryptophyta as major bacterivores in freshwater summer plankton ISME Journal 12: 1668-1681.
DOI: 10.1038/s41396-018-0057-5
Neuenschwander S., Ghai R., Pernthaler J., Salcher M. (2018) Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria ISME Journal 12: 185-198 .
DOI: 10.1038/ismej.2017.156
Šimek K., Grujčić V., Hahn M., Horňák K., Jezberová J., Kasalický V., Nedoma J., Salcher M., Shabarova T. (2018) Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates Limnology and Oceanography 63: 484–502.
DOI: 10.1002/lno.10759
Alfreider A., Baumer A., Bogensperger T., Posch T., Salcher M., Summerer M. (2017) CO2 assimilation strategies in stratified lakes: Diversity and distribution patterns of chemolithoautotrophs Environmental Microbiology 19: 2754–2768.
DOI: 10.1111/1462-2920.13786
Shabarova T., Kasalický V., Šimek K., Nedoma J., Znachor P., Posch T., Pernthaler J., Salcher M. (2017) Distribution and ecological preferences of the freshwater lineage LimA (genus Limnohabitans) revealed by a new double hybridization approach Environmental Microbiology 19: 1296–1309 .
DOI: 10.1111/1462-2920.13663
Šimek K., Pitsch G., Salcher M., Sirová D., Shabarova T., Adamec L., Posch T. (2017) Ecological Traits of the Algae-Bearing Tetrahymena utriculariae (Ciliophora) from Traps of the Aquatic Carnivorous Plant Utricularia reflexa Journal of Eukaryotic Microbiology 64: 336–348. .
DOI: 10.1111/jeu.12368

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Biology Centre CAS
Institute of Hydrobiology
Na Sádkách 702/7
370 05 České Budějovice

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