Publikace
| Celkem nalezeno: 150 záznamů |
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Gabaldon Tebar C., Devetter M.,
Hejzlar J.,
Šimek K.,
Znachor P.,
Nedoma J.,
Seďa J. (2019) Seasonal strengths of the abiotic and biotic drivers of a zooplankton community Freshwater Biology
64: 1326–1341.
DOI: 10.1111/fwb.13308 |
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Matoušů A., Rulík M.,
Tušer M., Bednařík A.,
Šimek K., Bussmann I. (2019) Methane dynamics in a large river: a case study of the Elbe River Aquatic Sciences
81: UNSP 12.
DOI: 10.1007/s00027-018-0609-9 |
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Šimek K.,
Grujčić V.,
Nedoma J., Jezberová J., Šorf M.,
Matoušů A., Pechar L., Posch T., Bruni E.P.,
Vrba J. (2019) Microbial food webs in hypertrophic fishponds: Omnivorous ciliate taxa are major protistan bacterivores Limnology and Oceanography
64: 2295–2309.
DOI: 10.1002/lno.11260 |
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Šimek K.,
Sirová D. (2019) Fluorescently Labeled Bacteria as a Tracer to Reveal Novel Pathways of Organic Carbon Flow in Aquatic Ecosystems Jove - Journal of Visualized Experiments
151: e59903.
DOI: 10.3791/59903 |
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Weinbauer M., Suominen S.,
Jezbera J., Kerros M.E., Marro S., Dolan J.,
Šimek K. (2019) Shifts in cell size and community composition of bacterioplankton due to grazing by heterotrophic flagellates: evidence from a marine system Aquatic Microbial Ecology
83: 295–308.
DOI: 10.3354/ame01919 |
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Grujčić V., Nuy J. K.,
Salcher M.,
Shabarova T.,
Kasalický V., Boenigk J., Jensen M. ,
Šimek K. (2018) Cryptophyta as major bacterivores in freshwater summer plankton ISME Journal
12: 1668-1681.
DOI: 10.1038/s41396-018-0057-5 |
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Kasalický V., Zeng Y. H. , Piwosz K.,
Šimek K., Kratochvilová H., Koblížek M. (2018) Aerobic Anoxygenic Photosynthesis Is Commonly Present within the Genus Limnohabitans Applied and Environmental Microbiology
84: e02116-17.
DOI: 10.1128/AEM.02116-17 |
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Mehrshad M., Salcher M.M., Okazaki Y., Nakano S.,
Šimek K., Andrei A.,
Ghai R. (2018) Hidden in plain sight—highly abundant and diverse planktonic freshwater Chloroflexi Microbiome
6: 176.
DOI: 10.1186/s40168-018-0563-8 |
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Piwosz K.,
Shabarova T., Tomasch J.,
Šimek K., Kopejtka K., Kahl S., Pieper D.H. , Koblížek M. (2018) Determining lineage-specific bacterial growth curves with a novel approach based on amplicon reads normalization using internal standard (ARNIS) ISME Journal
12: 2640-2654.
DOI: 10.1038/s41396-018-0213-y |
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Šimek K.,
Grujčić V., Hahn M., Horňák K., Jezberová J.,
Kasalický V.,
Nedoma J.,
Salcher M.,
Shabarova T. (2018) Bacterial prey food characteristics modulate community growth response of freshwater bacterivorous flagellates Limnology and Oceanography
63: 484–502.
DOI: 10.1002/lno.10759 |
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Sirová D., Bárta J.,
Šimek K., Posch T., Pech J., Stone J., Borovec J., Adamec L.,
Vrba J. (2018) Hunters or farmers? Microbiome characteristics help elucidate the diet composition in an aquatic carnivorous plant Microbiome
6 : 225.
DOI: 10.1186/s40168-018-0600-7 |
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Vrba J., Benedová Z., Jezberová J.,
Matoušů A., Musil M.,
Nedoma J., Pechar L., Potužák J.,
Řeháková K.,
Šimek K., Šorf M., Zemanová J. (2018) Nevstoupíš dvakrát do téhož rybníka – předběžná zpráva o stavu dnešních hypertrofních rybničních ekosystémů [You cannot step into the same fishpond twice – A preliminary report on the current status of hypertrophic fishpond ecosystems] Vodní hospodářství
68 (8): 1-5.
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Vrba J., Benedová Z., Jezberová J.,
Matoušů A., Musil M.,
Nedoma J., Pechar L., Potužák J.,
Řeháková K.,
Šimek K., Šorf M., Zemanová J. (2018) Nevstoupíš dvakrát do téhož rybníka aneb vývoj rybničních ekosystémů od Šusty k hypertrofii [You cannot step into the same fishpond twice - an evolution of fishpond ecosystems to hypertrophy] Sborník konference Rybníky 2018
2-11.
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Gabaldon Tebar C., Devetter M.,
Hejzlar J.,
Šimek K.,
Znachor P.,
Nedoma J.,
Seďa J. (2017) Repeated flood disturbance enhances rotifer dominance and diversity in a zooplankton community of a small dammed mountain pond Journal of Limnology
76 : 292–304 .
DOI: 10.4081/jlimnol.2016.1544 |
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Horňák K.,
Kasalický V.,
Šimek K., Grossart H. (2017) Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans-C and Polynucleobacter-B clusters of Betaproteobacteria Environmental Microbiology
19: 4519-4535.
DOI: 10.1111/1462-2920.13900 |
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Horňák K.,
Kasalický V.,
Šimek K., Grossart H. (2017) Strain-specific consumption and transformation of alga-derived dissolved organic matter by members of the Limnohabitans-C and Polynucleobacter-B clusters of Betaproteobacteria Environmental Microbiology
19: 4519–4535 .
DOI: 10.1111/1462-2920.13900 |
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Jezberová J.,
Jezbera J.,
Znachor P.,
Nedoma J.,
Kasalický V.,
Šimek K. (2017) The Limnohabitans genus harbors generalistic and opportunistic subtypes: evidence from spatiotemporal succession in a canyon-shaped reservoir Applied and Environmental Microbiology
83: e01530-17.
DOI: 10.1128/AEM.01530-17 |
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Jezberová J.,
Jezbera J.,
Znachor P.,
Nedoma J.,
Kasalický V.,
Šimek K. (2017) The Limnohabitans genus harbors generalistic and opportunistic subtypes: evidence from spatiotemporal succession in a canyon-shaped reservoir Applied and Environmental Microbiology
83: e01530-17.
DOI: 10.1128/AEM.01530-17 |
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Matoušů A., Osudar R.,
Šimek K., Bussmann I. (2017) Methane distribution and methane oxidation in the water column of the Elbe estuary, Germany Aquatic Sciences
79 : 443–458. .
DOI: 10.1007/s00027-016-0509-9 |
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Pitsch G., Adamec L., Dirren S., Nitsche F. ,
Šimek K.,
Sirová D., Posch T. (2017) The Green Tetrahymena utriculariae n. sp. (Ciliophora, Oligohymenophorea) with its endosymbiotic algae (Micractinium sp.), living in traps of a carnivorous aquatic plant Journal of Eukaryotic Microbiology
64: 322–335 .
DOI: 10.1111/jeu.12369 |
