Publications

Total found: 130 records
Zeng Y., Kasalický V., Šimek K., Koblížek M. (2012) Genome sequences of two freshwater betaproteobacterial isolates, Limnohabitans species strains Rim28 and Rim47, indicate their capabilities as both photoautotrophs and ammonia oxidizers. Journal of Bacteriology 194: 6302-6303..
Znachor P., Šimek K., Nedoma J. (2012) Bacterial colonization of the freshwater planktonic diatom Fragilaria crotonensis. Aquatic Microbial Ecology 66: 87–94..
Šimek K., Comerma M., García J., Nedoma J., Marcé R., Armengol J. (2011) The effect of river water circulation on the distribution and functioning of reservoir microbial communities as determined by a relative distance approach. Ecosystems 14: 1-14..
Šimek K., Kasalický V., Zapomělová E., Horňák K. (2011) Alga-derived substrates select for distinct Betaproteobacterial lineages and contribute to niche separation in Limnohabitans strains. Applied and Environmental Microbiology 77: 7307-7315..
Weinbauer M., Bonilla-Findji O., Chan A., Dolan J., Short S., Šimek K., Wilhelm S., Suttle C. (2011) Synechococcus growth in the ocean may depend on the lysis of heterotrophic bacteria. Journal of Plankton Research 33: 1465-1476..
Blom J., Horňák K., Šimek K., Pernthaler J. (2010) Aggregate formation in a freshwater bacterial strain induced by growth state and conspecific chemical cues. Environmental Microbiology 12: 2486–2495..
Hahn M., Kasalický V., Jezbera J., Brandt U., Jezberová J., Šimek K. (2010) Limnohabitans curvus gen. nov. sp. nov., a planktonic bacterium isolated from freshwater lake. International Journal of Systematic and Evolutionary Microbiology 60: 1358–1365..
DOI: DOI: 10.1099/ijs.0.013292-0
Hahn M., Kasalický V., Jezbera J., Brandt U., Šimek K. (2010) Limnohabitans australis sp. nov. isolated from a freshwater pond and emended description of the genus Limnohabitans. International Journal of Systematic and Evolutionary Microbiology 60: 2946–2950..
Horňák K., Jezbera J., Šimek K. (2010) Bacterial single-cell activities along the nutrient availability gradient in a canyon-shaped reservoir: a seasonal study. Aquatic Microbial Ecology 60: 215–225..
Kasalický V., Jezbera J., Šimek K., Hahn M. (2010) Limnohabitans planktonicus sp. nov. and Limnohabitans parvus sp. nov., planktonic betaproteobacteria isolated from a freshwater reservoir, and emended description of the genus Limnohabitans. International Journal of Systematic and Evolutionary Microbiology 60: 2710–2714..
Hejzlar J., Matěna J., Šimek K., Turek J., Znachor P., Žaloudík J., Rohlík V., Langhansová M. (2009) Fosfor jako hlavní příčina současného nepříznivého stavu eutrofizace a jakosti vody v nádrži Orlík [Phosphorus – the main cause of currently unfavourable state of eutrophication and water quality in Orlík Reservoir]. In: Sborník příspěvků Revitalizace Orlické nádrže 2008, odborný seminář, Písek, October 6, 2008. VŠTE, Č. Budějovice, ISBN 978–80–87278–03–1:pp. 84–95.
Nedoma J., Šimek K., Hejzlar J. (2009) Přísun a transformace znečištění v podélném profilu vltavského ramene nádrže Orlík [Pollution input and transformation along the longitudinal profile of the Vltava stretch in the Orlík]. In: Sborník příspěvků Revitalizace Orlické nádrže 2009, odborná konference, Písek, October 6–7, 2009. VŠTE, Č. Budějovice, ISBN 978–80–87278–29–1:pp. 31–36.
Tanaka T., Thingstad T., Gasol J., Cardelús C., Jezbera J., Sala M., Šimek K., Unrein F. (2009) Determining the availability of phosphate and glucose for bacteria in P-limited mesocosms of NW Mediterranean surface waters. Aquatic Microbial Ecology 56: 81–91..
Grossart H., Jezbera J., Horňák K., Hutalle K., Buck U., Šimek K. (2008) Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake. Environmental Microbiology 10: 635-652.
Horňák K., Jezbera J., Šimek K. (2008) Effects of a Microcystis aeruginosa bloom and bacterivory on bacterial abundance and activity in a eutrophic reservoir. Aquatic Microbial Ecology 52: 107-117.
Montagnes D., Barbosa A., Boenigk J., Davidson K., Jürgens K., Macek M., Parry J., Roberts E., Šimek K. (2008) Selective feeding behaviour of key free-living protists: avenues for continued study. Aquatic Microbial Ecology 53: 83-98.
Šimek K., Horňák K., Jezbera J., Nedoma J., Znachor P., Hejzlar J., Seďa J. (2008) Spatio-temporal patterns of bacterioplankton production and community composition related to phytoplankton composition and protistan bacterivory in a dam reservoir. Aquatic Microbial Ecology 51: 249-262.
Znachor P., Zapomělová E., Řeháková K., Nedoma J., Šimek K. (2008) The effect of extreme rainfall on summer succession and vertical distribution of phytoplankton in a lacustrine part of a eutrophic reservoir. Aquatic Sciences 70: 77-86.
Allers E., Gómez-Consarnau L., Pinhassi J., Gasol J., Šimek K., Pernthaler J. (2007) Response of Alteromonadaceae and Rhodobacteriaceae to glucose and phosphorus manipulation in marine mesocosms. Environmental Microbiology 9: 2417–2429..
Groben R., Hahn M., Horňák K., Mergeay J., Šimek K., Vrba J. (2007) Meeting report: ALTER-Net workshop about the “Application of molecular techniques to study biodiversity, structure and function of planktonic communities in lakes” at Blanes, Spain, February 15–16, 2007. Protist 158: 417–421..

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Biology Centre CAS
Institute of Hydrobiology
Na Sádkách 702/7
370 05 České Budějovice

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